updated docs for mash components

Author: tiagofilipe12

docs/user/components/mash_dist.rst

@@ -44,7 +44,10 @@ Parameters
 
 - ``refFile``: Specifies the reference file to be provided to mash. It can either
   be a fasta or a .msh reference sketch generated by mash.
-  Default: '/ngstools/data/patlas.msh'.
+  Default: '/ngstools/data/patlas.msh'. If the component ``mash_sketch_fasta``
+  is executed before this component, this parameter will be ignored and instead
+  the secondary link between the two processes will be used to feed this
+  component with the reference sketch.
 
 
 Published results

docs/user/components/mash_screen.rst

@@ -38,8 +38,11 @@ Parameters
   reference sequence. Default: 0.9.
 
 - ``refFile``: "Specifies the reference file to be provided to mash. It can
-  either be a fasta or a .msh reference sketch generated by mash.
-  Default: '/ngstools/data/patlas.msh'.
+  either be a fastq or a .msh reference sketch generated by mash.
+  Default: '/ngstools/data/patlas.msh'. If the component ``mash_sketch_fastq``
+  is executed before this component, this parameter will be ignored and instead
+  the secondary link between the two processes will be used to feed this
+  component with the reference sketch.
 
 
 Published results

docs/user/components/mash_sketch_fasta.rst

@@ -44,4 +44,4 @@ Default directives
 
 - ``mashSketchFasta``:
     - ``container``: flowcraft/mash-patlas
-    - ``version``: 1.4.1
+    - ``version``: 1.6.0-1

docs/user/components/mash_sketch_fastq.rst

@@ -4,7 +4,9 @@ mash_sketch_fastq
 Purpose
 -------
 
-This component performs mash sketch for fastq input files.
+This component performs mash sketch for fastq input files. These sketches can
+be used by ``mash_dist`` and ``mash_screen`` components to fetch the
+reference file for mash.
 
 .. note::
     - MASH documentation can be found `here <https://mash.readthedocs.io/en/latest/>`_.
@@ -52,4 +54,4 @@ Default directives
 
 - ``mashSketchFastq``:
     - ``container``: flowcraft/mash-patlas
-    - ``version``: 1.4.1
+    - ``version``: 1.6.0-1