Merge pull request #143 from assemblerflow/docker-issue-142

Added default docker option to avoid docker permission errors.

Author: cimendes

changelog.md

@@ -6,6 +6,7 @@
 
 - Added removal of duplicate IDs from `reads_download` component input.
 - Added seed parameter to `downsample_fastq` component.
+- Added default docker option to avoid docker permission errors.
 
 ### Bug fixes
 

flowcraft/nextflow.config

@@ -32,6 +32,13 @@ process {
     container = "flowcraft/flowcraft_base:1.0.0-1"
 }
 
+docker {
+    // Added default docker option to avoid docker permission errors. See issue
+    // #142
+    runOptions = "-u \$(id -u):\$(id -g)"
+}
+
+
 executor {
   $local {
       cpus = 4