1288 Delete simulation folder (#1323)

- Delete simulation directory including the corresponding plot scripts
- Move simulations and plot scripts to memilio-simulations repository

Co-authored-by: Sascha <51127093+xsaschako@users.noreply.github.com>
Co-authored-by: jubicker <113909589+jubicker@users.noreply.github.com>

Author: 3 people

cpp/CMakeLists.txt

@@ -8,7 +8,6 @@ set(CMAKE_CXX_STANDARD_REQUIRED "20")
 option(MEMILIO_BUILD_TESTS "Build memilio unit tests." ON)
 option(MEMILIO_BUILD_EXAMPLES "Build memilio examples." ON)
 option(MEMILIO_BUILD_MODELS "Build memilio models." ON)
-option(MEMILIO_BUILD_SIMULATIONS "Build memilio simulations that were used for scientific articles." ON)
 option(MEMILIO_BUILD_BENCHMARKS "Build memilio benchmarks with google benchmark." OFF)
 option(MEMILIO_BUILD_SBML_MODELS "Build the SBML importer and imported models." ON)
 option(MEMILIO_USE_BUNDLED_SPDLOG "Use spdlog bundled with epi" ON)
@@ -97,7 +96,7 @@ if(CMAKE_BUILD_TYPE STREQUAL "Debug" OR CMAKE_BUILD_TYPE STREQUAL "DEBUG")
             NAME coverage
             EXECUTABLE memilio-test
             LCOV_ARGS --ignore-errors gcov,mismatch
-            EXCLUDE "${CMAKE_SOURCE_DIR}/tests*" "${CMAKE_SOURCE_DIR}/simulations*" "${CMAKE_SOURCE_DIR}/examples*"
+            EXCLUDE "${CMAKE_SOURCE_DIR}/tests*" "${CMAKE_SOURCE_DIR}/examples*"
             "${CMAKE_SOURCE_DIR}/memilio/ad*" "${CMAKE_BINARY_DIR}/*" "/usr*" "${CMAKE_SOURCE_DIR}/*.F"
         )
     endif()
@@ -201,10 +200,6 @@ if(MEMILIO_BUILD_TESTS)
     add_subdirectory(tests)
 endif()
 
-if(MEMILIO_BUILD_SIMULATIONS)
-    add_subdirectory(simulations)
-endif()
-
 if(MEMILIO_BUILD_BENCHMARKS)
     add_subdirectory(benchmarks)
 endif()

cpp/models/abm/README.md

@@ -5,4 +5,4 @@ To get started, check out the [official documentation](https://memilio.readthedo
 or the code examples
 
 - [examples/abm.cpp](../../examples/abm_minimal.cpp)
-- [examples/abm_minimal.cpp](../../examples/abm_history_object.cpp)
+- [examples/abm_minimal.cpp](../../examples/abm_history_object.cpp)