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'not testcontainer'" >> $GITHUB_ENV + fi - name: Run validation shell: bash run: | @@ -97,7 +103,7 @@ jobs: gha:validate env: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - TOX_PYTEST_EXTRA_ARGS: ${{ matrix.TOX_PYTEST_EXTRA_ARGS }} + TOX_PYTEST_EXTRA_ARGS: ${{ matrix.TOX_PYTEST_EXTRA_ARGS || env.TOX_PYTEST_EXTRA_ARGS }} TOX_TEST_HARNESS: ${{ matrix.TOX_TEST_HARNESS }} TOX_EXTRA_COMMAND: ${{ matrix.TOX_EXTRA_COMMAND }} - uses: actions/upload-artifact@v4 diff --git a/poetry.lock b/poetry.lock index 590f32895..c138e1b9a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,23 +2,25 @@ [[package]] name = "anyio" -version = "4.11.0" -description = "High-level concurrency and networking framework on top of asyncio or Trio" +version = "4.5.2" +description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = true -python-versions = ">=3.9" +python-versions = ">=3.8" files = [ - {file = "anyio-4.11.0-py3-none-any.whl", hash = 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"1470834243bf70c42b04cee45e5fe0097d128b26469a1a80d348706e1979d97c" +python-versions = ">=3.8.1" +content-hash = "a9f7643c46c8fa5f969aa0554e147cc9d1ebc19284aabf9ed19991fa96f105c7" diff --git a/pyproject.toml b/pyproject.toml index 0d7582c26..4924a5af5 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -41,10 +41,7 @@ rdfs2dot = 'rdflib.tools.rdfs2dot:main' rdfgraphisomorphism = 'rdflib.tools.graphisomorphism:main' [tool.poetry.dependencies] -# TODO: temporarily add new python version constraints for testcontainers -# We can remove the upper bound once testcontainers releases a new version -# https://github.com/testcontainers/testcontainers-python/pull/909 -python = ">=3.9.2, <4.0" +python = ">=3.8.1" isodate = {version=">=0.7.2,<1.0.0", python = "<3.11"} pyparsing = ">=2.1.0,<4" berkeleydb = {version = "^18.1.0", optional = true} @@ -67,7 +64,7 @@ coverage = {version = "^7.0.1", extras = ["toml"]} types-setuptools = ">=68.0.0.3,<72.0.0.0" setuptools = ">=68,<72" wheel = ">=0.42,<0.46" -testcontainers = "^4.13.2" +testcontainers = {version = "^4.13.2", python = ">=3.9.2"} [tool.poetry.group.docs.dependencies] typing-extensions = "^4.11.0" diff --git a/rdflib/contrib/rdf4j/client.py b/rdflib/contrib/rdf4j/client.py index 3751fbdef..7608e4299 100644 --- a/rdflib/contrib/rdf4j/client.py +++ b/rdflib/contrib/rdf4j/client.py @@ -30,14 +30,16 @@ build_sparql_query_accept_header, build_spo_param, rdf_payload_to_stream, + validate_graph_name, + validate_no_bnodes, ) from rdflib.graph import DATASET_DEFAULT_GRAPH_ID, Dataset, Graph from rdflib.query import Result from rdflib.term import IdentifiedNode, Literal, URIRef -SubjectType = t.Union[IdentifiedNode, None] +SubjectType = t.Union[URIRef, None] PredicateType = t.Union[URIRef, None] -ObjectType = t.Union[IdentifiedNode, Literal, None] +ObjectType = t.Union[URIRef, Literal, None] @dataclass(frozen=True) @@ -198,8 +200,14 @@ def identifier(self): @staticmethod def _build_graph_name_params(graph_name: URIRef | str): params = {} - if isinstance(graph_name, URIRef) and graph_name == DATASET_DEFAULT_GRAPH_ID: - # Do nothing; GraphDB does not work with `?default=`, which is the default + if ( + isinstance(graph_name, URIRef) + and graph_name == DATASET_DEFAULT_GRAPH_ID + or isinstance(graph_name, str) + and graph_name == str(DATASET_DEFAULT_GRAPH_ID) + ): + # Do nothing; GraphDB does not work with `?default=` + # (note the trailing equal character), which is the default # behavior of httpx when setting the param value to an empty string. # httpx completely omits query parameters whose values are `None`, so that's # not an option either. @@ -231,6 +239,7 @@ def get(self, graph_name: URIRef | str) -> Graph: """ if not graph_name: raise ValueError("Graph name must be provided.") + validate_graph_name(graph_name) headers = { "Accept": self._content_type, } @@ -260,6 +269,7 @@ def add(self, graph_name: URIRef | str, data: str | bytes | BinaryIO | Graph): """ if not graph_name: raise ValueError("Graph name must be provided.") + validate_graph_name(graph_name) stream, should_close = rdf_payload_to_stream(data) headers = { "Content-Type": self._content_type, @@ -290,6 +300,7 @@ def overwrite(self, graph_name: URIRef | str, data: str | bytes | BinaryIO | Gra """ if not graph_name: raise ValueError("Graph name must be provided.") + validate_graph_name(graph_name) stream, should_close = rdf_payload_to_stream(data) headers = { "Content-Type": self._content_type, @@ -318,6 +329,7 @@ def clear(self, graph_name: URIRef | str): """ if not graph_name: raise ValueError("Graph name must be provided.") + validate_graph_name(graph_name) params = self._build_graph_name_params(graph_name) or None response = self.http_client.delete(self._build_url(graph_name), params=params) response.raise_for_status() @@ -412,9 +424,7 @@ def health(self) -> bool: f"Repository {self._identifier} is not healthy. {err.response.status_code} - {err.response.text}" ) - def size( - self, graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None - ) -> int: + def size(self, graph_name: URIRef | Iterable[URIRef] | str | None = None) -> int: """The number of statements in the repository or in the specified graph name. Parameters: @@ -431,6 +441,7 @@ def size( Raises: RepositoryFormatError: Fails to parse the repository size. """ + validate_graph_name(graph_name) params: dict[str, str] = {} build_context_param(params, graph_name) response = self.http_client.get( @@ -541,12 +552,16 @@ def get( subj: SubjectType = None, pred: PredicateType = None, obj: ObjectType = None, - graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None, + graph_name: URIRef | Iterable[URIRef] | str | None = None, infer: bool = True, content_type: str | None = None, ) -> Graph | Dataset: """Get RDF statements from the repository matching the filtering parameters. + !!! Note + The terms for `subj`, `pred`, `obj` or `graph_name` cannot be + [`BNodes`][rdflib.term.BNode]. + Parameters: subj: Subject of the statement to filter by, or `None` to match all. pred: Predicate of the statement to filter by, or `None` to match all. @@ -568,6 +583,7 @@ def get( A [`Graph`][rdflib.graph.Graph] or [`Dataset`][rdflib.graph.Dataset] object with the repository namespace prefixes bound to it. """ + validate_no_bnodes(subj, pred, obj, graph_name) if content_type is None: content_type = "application/n-quads" headers = {"Accept": content_type} @@ -632,7 +648,7 @@ def upload( def overwrite( self, data: str | bytes | BinaryIO | Graph | Dataset, - graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None, + graph_name: URIRef | Iterable[URIRef] | str | None = None, base_uri: str | None = None, content_type: str | None = None, ): @@ -652,7 +668,7 @@ def overwrite( `application/n-quads` when the value is `None`. """ stream, should_close = rdf_payload_to_stream(data) - + validate_graph_name(graph_name) try: headers = {"Content-Type": content_type or "application/n-quads"} params: dict[str, str] = {} @@ -675,10 +691,14 @@ def delete( subj: SubjectType = None, pred: PredicateType = None, obj: ObjectType = None, - graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None, + graph_name: URIRef | Iterable[URIRef] | str | None = None, ) -> None: """Deletes statements from the repository matching the filtering parameters. + !!! Note + The terms for `subj`, `pred`, `obj` or `graph_name` cannot be + [`BNodes`][rdflib.term.BNode]. + Parameters: subj: Subject of the statement to filter by, or `None` to match all. pred: Predicate of the statement to filter by, or `None` to match all. @@ -690,6 +710,7 @@ def delete( To query just the default graph, use [`DATASET_DEFAULT_GRAPH_ID`][rdflib.graph.DATASET_DEFAULT_GRAPH_ID]. """ + validate_no_bnodes(subj, pred, obj, graph_name) params: dict[str, str] = {} build_context_param(params, graph_name) build_spo_param(params, subj, pred, obj) @@ -808,9 +829,7 @@ def ping(self): f"Transaction ping failed: {response.status_code} - {response.text}" ) - def size( - self, graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None - ): + def size(self, graph_name: URIRef | Iterable[URIRef] | str | None = None): """The number of statements in the repository or in the specified graph name. Parameters: @@ -828,6 +847,7 @@ def size( RepositoryFormatError: Fails to parse the repository size. """ self._raise_for_closed() + validate_graph_name(graph_name) params = {"action": "SIZE"} build_context_param(params, graph_name) response = self.repo.http_client.put(self.url, params=params) @@ -913,12 +933,16 @@ def get( subj: SubjectType = None, pred: PredicateType = None, obj: ObjectType = None, - graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None = None, + graph_name: URIRef | Iterable[URIRef] | str | None = None, infer: bool = True, content_type: str | None = None, ) -> Graph | Dataset: """Get RDF statements from the repository matching the filtering parameters. + !!! Note + The terms for `subj`, `pred`, `obj` or `graph_name` cannot be + [`BNodes`][rdflib.term.BNode]. + Parameters: subj: Subject of the statement to filter by, or `None` to match all. pred: Predicate of the statement to filter by, or `None` to match all. @@ -940,6 +964,7 @@ def get( A [`Graph`][rdflib.graph.Graph] or [`Dataset`][rdflib.graph.Dataset] object with the repository namespace prefixes bound to it. """ + validate_no_bnodes(subj, pred, obj, graph_name) if content_type is None: content_type = "application/n-quads" headers = {"Accept": content_type} diff --git a/rdflib/contrib/rdf4j/util.py b/rdflib/contrib/rdf4j/util.py index ea370ad6d..9d99a8007 100644 --- a/rdflib/contrib/rdf4j/util.py +++ b/rdflib/contrib/rdf4j/util.py @@ -7,7 +7,7 @@ from rdflib.graph import DATASET_DEFAULT_GRAPH_ID, Dataset, Graph from rdflib.plugins.sparql.processor import prepareQuery -from rdflib.term import IdentifiedNode, URIRef +from rdflib.term import BNode, IdentifiedNode, URIRef if t.TYPE_CHECKING: from rdflib.contrib.rdf4j.client import ObjectType, PredicateType, SubjectType @@ -151,3 +151,32 @@ def build_sparql_query_accept_header(query: str, headers: dict[str, str]): headers["Accept"] = "application/n-triples" else: raise ValueError(f"Unsupported query type: {prepared_query.algebra.name}") + + +def validate_graph_name(graph_name: URIRef | t.Iterable[URIRef] | str | None): + if ( + isinstance(graph_name, BNode) + or isinstance(graph_name, t.Iterable) + and any(isinstance(x, BNode) for x in graph_name) + ): + raise ValueError("Graph name must not be a BNode.") + + +def validate_no_bnodes( + subj: SubjectType, + pred: PredicateType, + obj: ObjectType, + graph_name: URIRef | t.Iterable[URIRef] | str | None, +) -> None: + """Validate that the subject, predicate, and object are not BNodes.""" + if ( + isinstance(subj, BNode) + or isinstance(pred, BNode) + or isinstance(obj, BNode) + or isinstance(graph_name, BNode) + ): + raise ValueError( + "Subject, predicate, and object must not be a BNode: " + f"{subj}, {pred}, {obj}" + ) + validate_graph_name(graph_name) diff --git a/rdflib/plugins/stores/rdf4j.py b/rdflib/plugins/stores/rdf4j.py new file mode 100644 index 000000000..7f1bb5cad --- /dev/null +++ b/rdflib/plugins/stores/rdf4j.py @@ -0,0 +1,223 @@ +from __future__ import annotations + +from textwrap import dedent +from typing import Any, Generator, Iterable, Iterator, Mapping, Optional, Tuple + +from rdflib import Graph +from rdflib.contrib.rdf4j import has_httpx +from rdflib.contrib.rdf4j.exceptions import RepositoryNotFoundError +from rdflib.graph import ( + DATASET_DEFAULT_GRAPH_ID, + Dataset, + _ContextType, + _QuadType, + _TriplePatternType, + _TripleType, +) +from rdflib.store import VALID_STORE, Store +from rdflib.term import BNode, Node, URIRef, Variable + +if has_httpx: + from rdflib.contrib.rdf4j import RDF4JClient + + +def _inject_prefixes(query: str, extra_bindings: Mapping[str, Any]) -> str: + bindings = set(list(extra_bindings.items())) + if not bindings: + return query + return "\n".join( + [ + "\n".join(["PREFIX %s: <%s>" % (k, v) for k, v in bindings]), + "", # separate ns_bindings from query with an empty line + query, + ] + ) + + +def _node_to_sparql(node: Node) -> str: + if isinstance(node, BNode): + raise Exception( + "SPARQL-based stores do not support BNodes" + "See http://www.w3.org/TR/sparql11-query/#BGPsparqlBNodes" + ) + return node.n3() + + +def _default_repo_config(repository_id: str) -> str: + return dedent( + f""" + PREFIX config: + + [] a config:Repository ; + config:rep.id "{repository_id}" ; + config:rep.impl + [ + config:rep.type "openrdf:SailRepository" ; + config:sail.impl + [ + config:native.tripleIndexers "spoc,posc" ; + config:sail.defaultQueryEvaluationMode "STANDARD" ; + config:sail.iterationCacheSyncThreshold "10000" ; + config:sail.type "openrdf:NativeStore" ; + ] ; + ] ; + . + """ + ) + + +class RDF4JStore(Store): + """An RDF4J store.""" + + context_aware = True + formula_aware = False + transaction_aware = False + graph_aware = True + + def __init__( + self, + base_url: str, + repository_id: str, + configuration: str | None = None, + auth: tuple[str, str] | None = None, + timeout: float = 30.0, + create: bool = False, + **kwargs, + ): + if configuration is None: + configuration = _default_repo_config(repository_id) + self._client = RDF4JClient(base_url, auth, timeout, **kwargs) + self._repository_id = repository_id + self._repo = None + self.open(configuration, create) + super().__init__() + + @property + def client(self): + return self._client + + @property + def repo(self): + if self._repo is None: + self._repo = self.client.repositories.get(self._repository_id) + return self._repo + + def open( + self, configuration: str | tuple[str, str] | None, create: bool = False + ) -> int | None: + try: + # Try connecting to the repository. + self.repo.health() + except RepositoryNotFoundError: + if create: + self.client.repositories.create(self._repository_id, configuration) + self.repo.health() + else: + raise Exception(f"Repository {self._repository_id} not found.") + + return VALID_STORE + + def close(self, commit_pending_transaction: bool = False) -> None: + self.client.close() + + def add( + self, + triple: _TripleType, + context: _ContextType | None = None, + quoted: bool = False, + ) -> None: + s, p, o = triple + graph_name = ( + "" + if context is None or context.identifier == DATASET_DEFAULT_GRAPH_ID + else context.identifier.n3() + ) + statement = f"{s.n3()} {p.n3()} {o.n3()} {graph_name} ." + self.repo.upload(statement) + + def addN(self, quads: Iterable[_QuadType]) -> None: # noqa: N802 + statements = "" + for s, p, o, c in quads: + graph_name = ( + "" + if c is None or c.identifier == DATASET_DEFAULT_GRAPH_ID + else c.identifier.n3() + ) + statement = f"{s.n3()} {p.n3()} {o.n3()} {graph_name} .\n" + statements += statement + self.repo.upload(statements) + + def remove( + self, + triple: _TriplePatternType, + context: Optional[_ContextType] = None, + ) -> None: + s, p, o = triple + g = context.identifier if context is not None else None + self.repo.delete(s, p, o, g) + + def triples( + self, + triple_pattern: _TriplePatternType, + context: Optional[_ContextType] = None, + ) -> Iterator[Tuple[_TripleType, Iterator[Optional[_ContextType]]]]: + s, p, o = triple_pattern + graph_name = context.identifier if context is not None else None + result_graph = self.repo.get(s, p, o, graph_name) + if isinstance(result_graph, Dataset): + for s, p, o, g in result_graph: + yield (s, p, o), iter([Graph(self, identifier=g)]) + else: + # It's a Graph object. + for triple in result_graph: + # Returning None for _ContextType as it's not used by the caller. + yield triple, iter([None]) + + def contexts( + self, triple: Optional[_TripleType] = None + ) -> Generator[_ContextType, None, None]: + if triple is None: + for graph_name in self.repo.graph_names(): + yield Graph(self, identifier=graph_name) + else: + s, p, o = triple + params = ( + _node_to_sparql(s if s else Variable("s")), + _node_to_sparql(p if p else Variable("p")), + _node_to_sparql(o if o else Variable("o")), + ) + query = ( + "SELECT DISTINCT ?graph WHERE { GRAPH ?graph { %s %s %s } }" % params + ) + result = self.repo.query(query) + for row in result: + yield Graph(self, identifier=row["graph"]) + + def bind(self, prefix: str, namespace: URIRef, override: bool = True) -> None: + # Note: RDF4J namespaces always override. + self.repo.namespaces.set(prefix, namespace) + + def prefix(self, namespace: URIRef) -> Optional[str]: + namespace_prefixes = dict( + [(x.namespace, x.prefix) for x in self.repo.namespaces.list()] + ) + return namespace_prefixes.get(str(namespace)) + + def namespace(self, prefix: str) -> Optional[URIRef]: + result = self.repo.namespaces.get(prefix) + return URIRef(result) if result is not None else None + + def namespaces(self) -> Iterator[Tuple[str, URIRef]]: + for result in self.repo.namespaces.list(): + yield result.prefix, URIRef(result.namespace) + + def add_graph(self, graph: Graph) -> None: + if graph.identifier != DATASET_DEFAULT_GRAPH_ID: + # Note: this is a no-op since RDF4J doesn't support empty named graphs. + self.repo.update(f"CREATE SILENT GRAPH {graph.identifier.n3()}") + + def remove_graph(self, graph: Graph) -> None: + self.repo.graphs.clear(graph.identifier) + + def __len__(self, context: _ContextType | None = None) -> int: + return self.repo.size(context if context is None else context.identifier) diff --git a/test/test_rdf4j/test_e2e/conftest.py b/test/test_rdf4j/test_e2e/conftest.py index 90de67eec..9a087f205 100644 --- a/test/test_rdf4j/test_e2e/conftest.py +++ b/test/test_rdf4j/test_e2e/conftest.py @@ -1,22 +1,31 @@ import pathlib +from importlib.util import find_spec import pytest -from testcontainers.core.container import DockerContainer -from testcontainers.core.image import DockerImage -from testcontainers.core.waiting_utils import wait_for_logs +from rdflib import Dataset from rdflib.contrib.rdf4j import has_httpx +from rdflib.contrib.rdf4j.exceptions import RepositoryNotFoundError +from rdflib.namespace import NamespaceManager +from rdflib.plugins.stores.rdf4j import RDF4JStore + +has_testcontainers = find_spec("testcontainers") is not None pytestmark = pytest.mark.skipif( - not has_httpx, reason="skipping rdf4j tests, httpx not available" + not (has_httpx and has_testcontainers), + reason="skipping rdf4j tests, httpx or testcontainers not available", ) -if has_httpx: +if has_httpx and has_testcontainers: + from testcontainers.core.container import DockerContainer + from testcontainers.core.image import DockerImage + from testcontainers.core.waiting_utils import wait_for_logs + from rdflib.contrib.rdf4j import RDF4JClient GRAPHDB_PORT = 7200 - @pytest.fixture(scope="function") + @pytest.fixture(scope="package") def graphdb_container(): with DockerImage(str(pathlib.Path(__file__).parent / "docker")) as image: container = DockerContainer(str(image)) @@ -33,6 +42,10 @@ def client(graphdb_container: DockerContainer): f"http://localhost:{port}/", auth=("admin", "admin") ) as client: yield client + try: + client.repositories.delete("test-repo") + except (RepositoryNotFoundError, RuntimeError): + pass @pytest.fixture(scope="function") def repo(client: RDF4JClient): @@ -45,3 +58,19 @@ def repo(client: RDF4JClient): repo = client.repositories.create("test-repo", config) assert repo.identifier == "test-repo" yield repo + client.repositories.delete("test-repo") + + @pytest.fixture(scope="function") + def ds(graphdb_container: DockerContainer): + port = graphdb_container.get_exposed_port(7200) + store = RDF4JStore( + f"http://localhost:{port}/", + "test-repo", + auth=("admin", "admin"), + create=True, + ) + ds = Dataset(store) + ds.namespace_manager = NamespaceManager(ds, "none") + yield ds + ds.store.client.repositories.delete("test-repo") # type: ignore[attr-defined] + ds.close() diff --git a/test/test_rdf4j/test_e2e/test_e2e_rdf4j_store.py b/test/test_rdf4j/test_e2e/test_e2e_rdf4j_store.py new file mode 100644 index 000000000..9f3c47a8b --- /dev/null +++ b/test/test_rdf4j/test_e2e/test_e2e_rdf4j_store.py @@ -0,0 +1,528 @@ +from __future__ import annotations + +import typing as t + +import pytest + +from rdflib import RDF, SKOS, BNode, Dataset, Graph, Literal, URIRef, Variable +from rdflib.contrib.rdf4j import has_httpx +from rdflib.graph import DATASET_DEFAULT_GRAPH_ID, _TripleChoiceType + +pytestmark = pytest.mark.skipif( + not has_httpx, reason="skipping rdf4j tests, httpx not available" +) + +if has_httpx and t.TYPE_CHECKING: + from rdflib.contrib.rdf4j.client import Repository + + +@pytest.mark.testcontainer +def test_rdf4j_store_add(ds: Dataset): + assert len(ds) == 0 + ds.add((URIRef("http://example.com/s"), RDF.type, SKOS.Concept)) + assert len(ds) == 1 + + +@pytest.mark.testcontainer +def test_rdf4j_store_addn(ds: Dataset): + assert len(ds) == 0 + ds.addN( + [ + ( + URIRef("http://example.com/s"), + RDF.type, + SKOS.Concept, + URIRef("urn:graph:a"), # type: ignore[list-item] + ), + ( + URIRef("http://example.com/s"), + SKOS.prefLabel, + Literal("Label"), + DATASET_DEFAULT_GRAPH_ID, # type: ignore[list-item] + ), + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + URIRef("urn:graph:b"), # type: ignore[list-item] + ), + ] + ) + assert len(ds) == 3 + + +@pytest.mark.testcontainer +def test_graphs_method_default_graph(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + """ + # This returns 1 graph, the default graph, even when there are no triples. + graphs = list(ds.graphs()) + assert len(graphs) == 1 + assert graphs[0].identifier == DATASET_DEFAULT_GRAPH_ID + repo.upload(data) + graphs = list(ds.graphs()) + assert len(graphs) == 1 + graph = graphs[0] + assert graph.identifier == DATASET_DEFAULT_GRAPH_ID + assert len(graph) == 1 + + +@pytest.mark.testcontainer +def test_graphs_method_default_and_named_graphs(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + # This returns 1 graph, the default graph, even when there are no triples. + graphs = list(ds.graphs()) + assert len(graphs) == 1 + assert graphs[0].identifier == DATASET_DEFAULT_GRAPH_ID + repo.upload(data) + + # Retrieve graphs with no triple pattern. + graphs = list(ds.graphs()) + assert len(graphs) == 3 + + graph_a = graphs[0] + assert graph_a.identifier == URIRef("urn:graph:b") + assert len(graph_a) == 1 + + graph_b = graphs[1] + assert graph_b.identifier == URIRef("urn:graph:a") + assert len(graph_b) == 2 + + default_graph = graphs[2] + assert default_graph.identifier == DATASET_DEFAULT_GRAPH_ID + assert len(default_graph) == 1 + + # Retrieve graphs with a triple pattern. + graphs = list( + ds.graphs(triple=(URIRef("http://example.com/s"), RDF.type, SKOS.Concept)) + ) + # Note: it's returning 2 graphs instead of 1 because the Dataset class always + # includes the default graph. + # I don't think this is the correct behaviour. TODO: raise a ticket for this. + # What should happen is, ds.graphs() includes the default graph if the triple + # pattern is None. Otherwise, it should only include graphs that contain the triple. + assert len(graphs) == 2 + graph_a = graphs[0] + assert graph_a.identifier == URIRef("urn:graph:a") + assert len(graph_a) == 2 + + +@pytest.mark.testcontainer +def test_add_graph(ds: Dataset): + assert len(ds) == 0 + graphs = list(ds.graphs()) + assert len(graphs) == 1 + assert graphs[0].identifier == DATASET_DEFAULT_GRAPH_ID + + graph_name = URIRef("urn:graph:a") + + # Add a graph to the dataset using a URIRef. + # Note, this is a no-op since RDF4J doesn't support named graphs with no statements, + # which is why the length of the graphs is 1 (the default graph). + ds.add_graph(graph_name) + graphs = list(ds.graphs()) + assert len(graphs) == 1 + assert graphs[0].identifier == DATASET_DEFAULT_GRAPH_ID + + # Add a graph object to the dataset. + # This will create a new graph in RDF4J, along with the statements. + graph = Graph(identifier=graph_name) + graph.add((URIRef("http://example.com/s"), RDF.type, SKOS.Concept)) + graph.add((URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label"))) + ds.add_graph(graph) + # Verify that the graph was added. + graphs = list(ds.graphs()) + assert len(graphs) == 2 + graph_a = graphs[0] + assert graphs[1].identifier == DATASET_DEFAULT_GRAPH_ID + assert graph_a.identifier == graph_name + assert len(graph_a) == 2 + + +@pytest.mark.testcontainer +def test_remove_graph(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + # This returns 1 graph, the default graph, even when there are no triples. + graphs = list(ds.graphs()) + assert len(graphs) == 1 + assert graphs[0].identifier == DATASET_DEFAULT_GRAPH_ID + repo.upload(data) + assert len(ds) == 4 + + ds.remove_graph(URIRef("urn:graph:a")) + assert len(ds) == 2 + graphs = list(ds.graphs()) + assert len(graphs) == 2 + assert graphs[0].identifier == URIRef("urn:graph:b") + assert graphs[1].identifier == DATASET_DEFAULT_GRAPH_ID + + +@pytest.mark.testcontainer +def test_namespaces(ds: Dataset): + assert list(ds.namespaces()) == [] + + skos_namespace = URIRef(str(SKOS)) + ds.bind("skos", skos_namespace) + assert list(ds.namespaces()) == [("skos", skos_namespace)] + assert ds.store.namespace("skos") == skos_namespace + assert ds.store.namespace("foo") is None + assert ds.store.prefix(skos_namespace) == "skos" + assert ds.store.prefix(URIRef("http://example.com/")) is None + + +@pytest.mark.testcontainer +def test_triples(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 4 + + # We don't have default_union enabled, returns the single statement from the + # default graph. + triples = set(ds.triples((None, None, None))) + assert triples == { + (URIRef("http://example.com/s"), SKOS.definition, Literal("Definition")), + } + + # Enable default_union, returns all distinct statements. + ds.default_union = True + triples = set(ds.triples((None, None, None))) + assert triples == { + (URIRef("http://example.com/s"), RDF.type, SKOS.Concept), + (URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label")), + (URIRef("http://example.com/s"), SKOS.definition, Literal("Definition")), + } + + # Triple pattern, return only the matching statements. + triples = set(ds.triples((None, SKOS.prefLabel, None))) + assert triples == { + (URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label")), + } + + # Disable default_union, returns no statements. + ds.default_union = False + triples = set(ds.triples((None, SKOS.prefLabel, None))) + assert triples == set() + + # Triple pattern, return matching statements in the default graph. + triples = set(ds.triples((None, SKOS.definition, None))) + assert triples == { + (URIRef("http://example.com/s"), SKOS.definition, Literal("Definition")), + } + + +@pytest.mark.testcontainer +def test_quads(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 4 + + quads = set(ds.quads((None, None, None, DATASET_DEFAULT_GRAPH_ID))) # type: ignore[arg-type] + assert quads == { + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + DATASET_DEFAULT_GRAPH_ID, + ), + } + + quads = set(ds.quads((None, None, None, URIRef("urn:graph:a")))) # type: ignore[arg-type] + assert quads == { + ( + URIRef("http://example.com/s"), + RDF.type, + SKOS.Concept, + URIRef("urn:graph:a"), + ), + ( + URIRef("http://example.com/s"), + SKOS.prefLabel, + Literal("Label"), + URIRef("urn:graph:a"), + ), + } + + quads = set(ds.quads((None, None, None, URIRef("urn:graph:b")))) # type: ignore[arg-type] + assert quads == { + ( + URIRef("http://example.com/s"), + SKOS.prefLabel, + Literal("Label"), + URIRef("urn:graph:b"), + ) + } + + +@pytest.mark.testcontainer +@pytest.mark.parametrize( + "s, p, o, g, expected_size", + [ + [None, None, None, None, 0], + [URIRef("http://example.com/s"), None, None, None, 0], + [None, RDF.type, None, None, 3], + [None, SKOS.prefLabel, None, None, 2], + [None, SKOS.prefLabel, None, URIRef("urn:graph:a"), 3], + [None, None, None, DATASET_DEFAULT_GRAPH_ID, 3], + ], +) +def test_remove(ds: Dataset, s, p, o, g, expected_size): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 4 + repo.delete(s, p, o, g) + assert len(ds) == expected_size + + +@pytest.mark.testcontainer +@pytest.mark.parametrize( + "default_union, triples_choices, expected_triples", + [ + [ + False, + (None, [SKOS.prefLabel, SKOS.definition], None), + { + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + ), + }, + ], + [ + True, + (None, [SKOS.prefLabel, SKOS.definition], None), + { + (URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label")), + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + ), + }, + ], + [ + True, + (None, [RDF.type, SKOS.prefLabel], None), + { + (URIRef("http://example.com/s"), RDF.type, SKOS.Concept), + (URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label")), + }, + ], + [ + True, + (None, [RDF.type, SKOS.definition], None), + { + (URIRef("http://example.com/s"), RDF.type, SKOS.Concept), + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + ), + }, + ], + ], +) +def test_triples_choices_default_union_on( + ds: Dataset, + default_union: bool, + triples_choices: _TripleChoiceType, + expected_triples, +): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 4 + ds.default_union = default_union + triples = set(ds.triples_choices(triples_choices)) + assert triples == expected_triples + + +@pytest.mark.testcontainer +@pytest.mark.parametrize( + "default_union, query, expected_result_bindings", + [ + [ + False, + "select * where { ?s ?p ?o }", + {(URIRef("http://example.com/s"), SKOS.definition, Literal("Definition"))}, + ], + [ + True, + "select * where { ?s ?p ?o }", + { + (URIRef("http://example.com/s"), RDF.type, SKOS.Concept), + (URIRef("http://example.com/s"), SKOS.prefLabel, Literal("Label")), + ( + URIRef("http://example.com/s"), + SKOS.definition, + Literal("Definition"), + ), + }, + ], + ], +) +def test_query_default_graph_behaviour( + ds: Dataset, + default_union: bool, + query: str, + expected_result_bindings: list[dict[Variable, URIRef | BNode | Literal]], +): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 4 + ds.default_union = default_union + result = ds.query(query) + assert set(tuple(x.values()) for x in result.bindings) == expected_result_bindings + + +@pytest.mark.testcontainer +def test_query_init_ns(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{RDF.type}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 5 + query = """ + select distinct ?s + where { + graph ?g { + ?s a ex:Term . + } + } + """ + result = ds.query(query, initNs={"ex": "http://example.com/type/"}) + assert len(result) == 1 + assert set(tuple(x.values()) for x in result.bindings) == { + (URIRef("http://example.com/s"),) + } + + +@pytest.mark.testcontainer +def test_query_init_bindings(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{RDF.type}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 5 + + query = """ + SELECT ?o + WHERE { + GRAPH ?g { + ?s ?p ?o . + } + } + """ + result = ds.query(query, initBindings={"p": RDF.type}) + assert len(result) == 2 + assert set(tuple(x.values()) for x in result.bindings) == { + (SKOS.Concept,), + (URIRef("http://example.com/type/Term"),), + } + + +@pytest.mark.testcontainer +def test_query_update_delete_default_graph_triples(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{RDF.type}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 5 + + query = """ + DELETE { + ?s ?p ?o + } + WHERE { + ?s ?p ?o + } + """ + ds.update(query) + assert len(ds) == 4 + + +@pytest.mark.testcontainer +def test_query_update(ds: Dataset): + repo: Repository = ds.store.repo # type: ignore[attr-defined] + data = f""" + <{RDF.type}> <{SKOS.Concept}> . + <{RDF.type}> . + <{SKOS.prefLabel}> "Label" . + <{SKOS.prefLabel}> "Label" . + <{SKOS.definition}> "Definition" . + """ + repo.upload(data) + assert len(ds) == 5 + + query = """ + DELETE { + GRAPH ?g { + ?s ?p ?o + } + } + WHERE { + GRAPH ?g { + ?s ?p ?o + } + } + """ + ds.update(query) + assert len(ds) == 1 diff --git a/test/test_rdf4j/test_e2e/test_e2e_repo_management.py b/test/test_rdf4j/test_e2e/test_e2e_repo_management.py index ed25eb25a..dba939156 100644 --- a/test/test_rdf4j/test_e2e/test_e2e_repo_management.py +++ b/test/test_rdf4j/test_e2e/test_e2e_repo_management.py @@ -176,3 +176,41 @@ def raise_for_status(self): monkeypatch.setattr(httpx.Client, "post", lambda *args, **kwargs: MockResponse()) with pytest.raises(RepositoryNotHealthyError): repo.health() + + +@pytest.mark.xfail( + reason="RDF4J REST API does not support referencing blank nodes directly." +) +def test_repo_delete_statement_with_bnode(client: RDF4JClient): + config_path = pathlib.Path(__file__).parent / "repo-configs/test-repo-config.ttl" + with open(config_path) as file: + config = file.read() + + repo = client.repositories.create("test-repo", config) + assert repo.identifier == "test-repo" + assert repo.health() + with open(pathlib.Path(__file__).parent.parent / "data/quads-2.nq", "rb") as file: + repo.overwrite(file) + + assert repo.size() == 1 + repo.delete(subj=BNode("b-test")) # type: ignore[arg-type] + assert repo.size() == 0 + + +@pytest.mark.xfail( + reason="RDF4J REST API does not support referencing blank nodes directly." +) +def test_repo_delete_statement_with_bnode_graph(client: RDF4JClient): + config_path = pathlib.Path(__file__).parent / "repo-configs/test-repo-config.ttl" + with open(config_path) as file: + config = file.read() + + repo = client.repositories.create("test-repo", config) + assert repo.identifier == "test-repo" + assert repo.health() + with open(pathlib.Path(__file__).parent.parent / "data/quads-3.nq", "rb") as file: + repo.overwrite(file) + + assert repo.size() == 1 + repo.delete(subj=BNode("graph")) # type: ignore[arg-type] + assert repo.size() == 0 diff --git a/test/test_rdf4j/test_e2e/test_e2e_repo_query.py b/test/test_rdf4j/test_e2e/test_e2e_repo_query.py index 6d28e3aa4..1b58165e7 100644 --- a/test/test_rdf4j/test_e2e/test_e2e_repo_query.py +++ b/test/test_rdf4j/test_e2e/test_e2e_repo_query.py @@ -15,6 +15,7 @@ from rdflib.contrib.rdf4j.client import Repository +@pytest.mark.testcontainer def test_e2e_repo_query(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) diff --git a/test/test_rdf4j/test_e2e/test_e2e_repo_transaction.py b/test/test_rdf4j/test_e2e/test_e2e_repo_transaction.py index edece3d16..a4d9bb0ac 100644 --- a/test/test_rdf4j/test_e2e/test_e2e_repo_transaction.py +++ b/test/test_rdf4j/test_e2e/test_e2e_repo_transaction.py @@ -16,6 +16,7 @@ from rdflib.contrib.rdf4j.client import Repository, Transaction +@pytest.mark.testcontainer def test_e2e_repo_transaction(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) @@ -56,6 +57,7 @@ def test_e2e_repo_transaction(repo: Repository): assert repo.size() == 3 +@pytest.mark.testcontainer def test_e2e_repo_transaction_delete(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) @@ -70,6 +72,7 @@ def test_e2e_repo_transaction_delete(repo: Repository): assert txn.size("urn:graph:a2") == 0 +@pytest.mark.testcontainer def test_e2e_repo_transaction_update(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) @@ -82,6 +85,7 @@ def test_e2e_repo_transaction_update(repo: Repository): assert txn.size("urn:graph:a2") == 1 +@pytest.mark.testcontainer def test_e2e_repo_transaction_get(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) diff --git a/test/test_rdf4j/test_e2e/test_e2e_repo_update.py b/test/test_rdf4j/test_e2e/test_e2e_repo_update.py index 78f132c0a..12313b901 100644 --- a/test/test_rdf4j/test_e2e/test_e2e_repo_update.py +++ b/test/test_rdf4j/test_e2e/test_e2e_repo_update.py @@ -14,6 +14,7 @@ from rdflib.contrib.rdf4j.client import Repository +@pytest.mark.testcontainer def test_e2e_repo_query(repo: Repository): path = str(Path(__file__).parent.parent / "data/quads-1.nq") repo.overwrite(path) diff --git a/test/test_rdf4j/test_e2e/test_graphdb/conftest.py b/test/test_rdf4j/test_e2e/test_graphdb/conftest.py index 97e741ef1..492d40bf9 100644 --- a/test/test_rdf4j/test_e2e/test_graphdb/conftest.py +++ b/test/test_rdf4j/test_e2e/test_graphdb/conftest.py @@ -1,13 +1,19 @@ +from importlib.util import find_spec + import pytest -from testcontainers.core.container import DockerContainer from rdflib.contrib.rdf4j import has_httpx +has_testcontainers = find_spec("testcontainers") is not None + pytestmark = pytest.mark.skipif( - not has_httpx, reason="skipping rdf4j tests, httpx not available" + not (has_httpx and has_testcontainers), + reason="skipping rdf4j tests, httpx or testcontainers not available", ) -if has_httpx: +if has_httpx and has_testcontainers: + from testcontainers.core.container import DockerContainer + from rdflib.contrib.graphdb import GraphDBClient @pytest.fixture(scope="function") diff --git a/test/test_rdf4j/test_unit/repository/test_repo_delete.py b/test/test_rdf4j/test_unit/repository/test_repo_delete.py index 390c0aa95..287cdb224 100644 --- a/test/test_rdf4j/test_unit/repository/test_repo_delete.py +++ b/test/test_rdf4j/test_unit/repository/test_repo_delete.py @@ -7,7 +7,7 @@ from rdflib.contrib.rdf4j import has_httpx from rdflib.graph import DATASET_DEFAULT_GRAPH_ID -from rdflib.term import BNode, IdentifiedNode, URIRef +from rdflib.term import URIRef pytestmark = pytest.mark.skipif( not has_httpx, reason="skipping rdf4j tests, httpx not available" @@ -38,16 +38,6 @@ }, ], [None, None, None, {}], - [ - BNode("some-bnode"), - URIRef("http://example.com/p"), - BNode("some-bnode-2"), - { - "subj": "_:some-bnode", - "pred": "", - "obj": "_:some-bnode-2", - }, - ], ], ) def test_repo_delete_spo( @@ -76,17 +66,12 @@ def test_repo_delete_spo( [DATASET_DEFAULT_GRAPH_ID, "null"], ["http://example.com/graph", ""], [URIRef("http://example.com/graph"), ""], - [BNode("some-bnode"), "_:some-bnode"], - [ - [URIRef("http://example.com/graph"), BNode("some-bnode")], - ",_:some-bnode", - ], [None, None], ], ) def test_repo_delete_graph_name( repo: Repository, - graph_name: IdentifiedNode | t.Iterable[IdentifiedNode] | str | None, + graph_name: URIRef | t.Iterable[URIRef] | str | None, expected_graph_name_param: str, monkeypatch: pytest.MonkeyPatch, ): diff --git a/test/test_rdf4j/test_unit/repository/test_repo_get.py b/test/test_rdf4j/test_unit/repository/test_repo_get.py index b5a46c1e3..b1b8fe066 100644 --- a/test/test_rdf4j/test_unit/repository/test_repo_get.py +++ b/test/test_rdf4j/test_unit/repository/test_repo_get.py @@ -8,7 +8,7 @@ from rdflib import Dataset, Graph from rdflib.contrib.rdf4j import has_httpx from rdflib.graph import DATASET_DEFAULT_GRAPH_ID -from rdflib.term import BNode, IdentifiedNode, URIRef +from rdflib.term import URIRef pytestmark = pytest.mark.skipif( not has_httpx, reason="skipping rdf4j tests, httpx not available" @@ -98,18 +98,13 @@ def test_repo_content_type( [DATASET_DEFAULT_GRAPH_ID, "null"], ["http://example.com/graph", ""], [URIRef("http://example.com/graph"), ""], - [BNode("some-bnode"), "_:some-bnode"], - [ - [URIRef("http://example.com/graph"), BNode("some-bnode")], - ",_:some-bnode", - ], [None, None], ], ) def test_repo_get_graph_name( repo: Repository, monkeypatch: pytest.MonkeyPatch, - graph_name: IdentifiedNode | t.Iterable[IdentifiedNode] | str | None, + graph_name: URIRef | t.Iterable[URIRef] | str | None, expected_graph_name_param: str, ): """ @@ -177,16 +172,6 @@ def test_repo_get_infer( }, ], [None, None, None, {}], - [ - BNode("some-bnode"), - URIRef("http://example.com/p"), - BNode("some-bnode-2"), - { - "subj": "_:some-bnode", - "pred": "", - "obj": "_:some-bnode-2", - }, - ], ], ) def test_repo_get_spo( diff --git a/test/test_rdf4j/test_unit/repository/test_repo_overwrite.py b/test/test_rdf4j/test_unit/repository/test_repo_overwrite.py index e378c9d1d..f45cfa33c 100644 --- a/test/test_rdf4j/test_unit/repository/test_repo_overwrite.py +++ b/test/test_rdf4j/test_unit/repository/test_repo_overwrite.py @@ -7,7 +7,7 @@ import pytest -from rdflib import BNode, Dataset, Graph, IdentifiedNode, URIRef +from rdflib import Dataset, Graph, URIRef from rdflib.contrib.rdf4j import has_httpx from rdflib.graph import DATASET_DEFAULT_GRAPH_ID @@ -131,17 +131,12 @@ def test_repo_overwrite_data( [DATASET_DEFAULT_GRAPH_ID, "null"], ["http://example.com/graph", ""], [URIRef("http://example.com/graph"), ""], - [BNode("some-bnode"), "_:some-bnode"], - [ - [URIRef("http://example.com/graph"), BNode("some-bnode")], - ",_:some-bnode", - ], [None, None], ], ) def test_repo_overwrite_graph_name( repo: Repository, - graph_name: IdentifiedNode | Iterable[IdentifiedNode] | str | None, + graph_name: URIRef | Iterable[URIRef] | str | None, expected_graph_name_param: str, monkeypatch: pytest.MonkeyPatch, ): diff --git a/test/test_rdf4j/test_unit/repository/test_repo_size.py b/test/test_rdf4j/test_unit/repository/test_repo_size.py index 3370ca9e3..5a7c4fb85 100644 --- a/test/test_rdf4j/test_unit/repository/test_repo_size.py +++ b/test/test_rdf4j/test_unit/repository/test_repo_size.py @@ -8,7 +8,7 @@ from rdflib.contrib.rdf4j import has_httpx from rdflib.contrib.rdf4j.exceptions import RepositoryFormatError from rdflib.graph import DATASET_DEFAULT_GRAPH_ID -from rdflib.term import BNode, IdentifiedNode, URIRef +from rdflib.term import URIRef pytestmark = pytest.mark.skipif( not has_httpx, reason="skipping rdf4j tests, httpx not available" @@ -28,18 +28,13 @@ [DATASET_DEFAULT_GRAPH_ID, "null"], ["http://example.com/graph", ""], [URIRef("http://example.com/graph"), ""], - [BNode("some-bnode"), "_:some-bnode"], - [ - [URIRef("http://example.com/graph"), BNode("some-bnode")], - ",_:some-bnode", - ], [None, None], ], ) def test_repo_size_graph_name( repo: Repository, monkeypatch: pytest.MonkeyPatch, - graph_name: IdentifiedNode | t.Iterable[IdentifiedNode] | str | None, + graph_name: URIRef | t.Iterable[URIRef] | str | None, expected_graph_name_param: str, ): """ diff --git a/test/test_rdf4j/test_unit/repository/test_repo_transaction_get.py b/test/test_rdf4j/test_unit/repository/test_repo_transaction_get.py index 28e3c3f1d..9cce73d89 100644 --- a/test/test_rdf4j/test_unit/repository/test_repo_transaction_get.py +++ b/test/test_rdf4j/test_unit/repository/test_repo_transaction_get.py @@ -5,7 +5,7 @@ import pytest -from rdflib import BNode, Dataset, Graph, IdentifiedNode, URIRef +from rdflib import Dataset, Graph, URIRef from rdflib.contrib.rdf4j import has_httpx from rdflib.graph import DATASET_DEFAULT_GRAPH_ID @@ -113,18 +113,13 @@ def test_repo_transaction_get_content_type( [DATASET_DEFAULT_GRAPH_ID, "null"], ["http://example.com/graph", ""], [URIRef("http://example.com/graph"), ""], - [BNode("some-bnode"), "_:some-bnode"], - [ - [URIRef("http://example.com/graph"), BNode("some-bnode")], - ",_:some-bnode", - ], [None, None], ], ) def test_repo_transaction_get_graph_name( txn: Transaction, monkeypatch: pytest.MonkeyPatch, - graph_name: IdentifiedNode | t.Iterable[IdentifiedNode] | str | None, + graph_name: URIRef | t.Iterable[URIRef] | str | None, expected_graph_name_param: str, ): """ @@ -201,17 +196,6 @@ def test_repo_transaction_get_infer( "action": "GET", }, ], - [ - BNode("some-bnode"), - URIRef("http://example.com/p"), - BNode("some-bnode-2"), - { - "action": "GET", - "subj": "_:some-bnode", - "pred": "", - "obj": "_:some-bnode-2", - }, - ], ], ) def test_repo_transaction_get_spo( diff --git a/test/test_rdf4j/test_unit/util/test_rdf4j_util.py b/test/test_rdf4j/test_unit/util/test_rdf4j_util.py index 7fd742cf5..5ebff39e3 100644 --- a/test/test_rdf4j/test_unit/util/test_rdf4j_util.py +++ b/test/test_rdf4j/test_unit/util/test_rdf4j_util.py @@ -13,9 +13,10 @@ build_context_param, build_sparql_query_accept_header, rdf_payload_to_stream, + validate_no_bnodes, ) from rdflib.graph import DATASET_DEFAULT_GRAPH_ID, Dataset, Graph -from rdflib.term import BNode, URIRef +from rdflib.term import BNode, Literal, URIRef @pytest.mark.parametrize( @@ -73,3 +74,23 @@ def test_build_sparql_query_accept_header(monkeypatch: pytest.MonkeyPatch): with pytest.raises(ValueError, match="Unsupported query type: InvalidQueryType"): build_sparql_query_accept_header("blah", {}) + + +@pytest.mark.parametrize( + "subj, pred, obj, graph_name", + [ + [BNode(), None, None, None], + [None, BNode(), None, None], + [None, None, BNode(), None], + [None, None, None, BNode()], + [None, None, None, [BNode(), URIRef("http://example.com/graph")]], + ], +) +def test_validate_no_bnodes( + subj: URIRef | None, + pred: URIRef | None, + obj: URIRef | Literal | None, + graph_name, +): + with pytest.raises(ValueError, match="must not be a BNode"): + validate_no_bnodes(subj, pred, obj, graph_name) diff --git a/tox.ini b/tox.ini index 87f322453..e5ebef9de 100644 --- a/tox.ini +++ b/tox.ini @@ -22,6 +22,7 @@ commands_pre = py3{8,9,10,11,12,13,14}: python -c 'import os; print("\n".join(f"{key}={value}" for key, value in os.environ.items()))' py3{8,9,10,11,12,13,14}: poetry check --lock py3{8,9,10,11,12,13,14}: poetry install --no-root --only=main --only=dev --only=lint --only=tests {env:POETRY_ARGS_docs:} {env:POETRY_ARGS_extensive:} {env:POETRY_ARGS_lxml:} {env:POETRY_ARGS:} --sync + py3{9,10,11,12,13,14}: poetry install --extras rdf4j --sync commands = min: python -c 'import sys; print("min qualifier not supported on this environment"); sys.exit(1);' poetry config --list