Gemini Logical Layout (#83)

* moves for calibration.

* Add reservoir sites and inter-zone moves.

* Add realistic move trajectories

* Add moves to AOD sites.

* a few typos

* add notebook as dependency

* Add animate_shuttle from bloqade-insight

* Simplify row -> row pm 1 moves

* add global vars

* running linter and adding new stdlib

* refactor original arch spec

* removing print and updating workflow

* refactor gemini into subpackage

* test initial locations with specing + fixing bug

* fixing some bugs in interpreter and tracer + adding missing methods

* fixing bugs in tracer interpreter with new spec commands and adding tests

* adding tests

* making tests a bit more robust

* restructing tests

* making linter happy with new version of bloqade-geometry

* make linter happy

* Removing animation code

* updating lock file

---------

Co-authored-by: tcochran-quera <tcochran@quera.com>

Author: weinbe58

.pre-commit-config.yaml

@@ -26,7 +26,7 @@ repos:
   hooks:
     - id: pyright-check
       name: pyright-check
-      entry: uv run pyright .
+      entry: uv run pyright src test
       language: system
       pass_filenames: false
       always_run: true