cytation5: movement over well, coverage, _auto_focus_search_range (#406)

Author: rickwierenga

docs/user_guide/cytation5.ipynb

@@ -1,6 +1,6 @@
-from .biotek_backend import Cytation5Backend
+from .biotek_backend import Cytation5Backend, Cytation5ImagingConfig
 from .clario_star import CLARIOStar
 from .image_reader import ImageReader
 from .imager import Imager
 from .plate_reader import PlateReader
-from .standard import Exposure, FocalPosition, Gain, ImagingMode
+from .standard import Exposure, FocalPosition, Gain, ImagingMode, Objective

pylabrobot/plate_reading/__init__.py

@@ -1,10 +1,17 @@
 from __future__ import annotations
 
 from abc import ABCMeta, abstractmethod
-from typing import List
+from typing import List, Optional
 
 from pylabrobot.machines.backend import MachineBackend
-from pylabrobot.plate_reading.standard import Exposure, FocalPosition, Gain, ImagingMode
+from pylabrobot.plate_reading.standard import (
+  Exposure,
+  FocalPosition,
+  Gain,
+  Image,
+  ImagingMode,
+  Objective,
+)
 from pylabrobot.resources.plate import Plate
 
 
@@ -25,7 +32,7 @@ async def open(self) -> None:
     """Open the plate reader. Also known as plate out."""
 
   @abstractmethod
-  async def close(self) -> None:
+  async def close(self, plate: Optional[Plate]) -> None:
     """Close the plate reader. Also known as plate in."""
 
   @abstractmethod
@@ -57,11 +64,12 @@ async def capture(
     row: int,
     column: int,
     mode: ImagingMode,
+    objective: Objective,
     exposure_time: Exposure,
     focal_height: FocalPosition,
     gain: Gain,
     plate: Plate,
-  ) -> List[List[float]]:
+  ) -> List[Image]:
     """Capture an image of the plate in the specified mode."""