commit before moving to fasrc

Author: TinasheMTapera

.gitignore

@@ -1,4 +1,5 @@
 .micromamba
 logs/*
 .snakemake/*
-.DS_Store
+.DS_Store
+sandbox

conf/config.yaml

@@ -1,14 +1,20 @@
 defaults:
   - _self_
   - datapaths: datapaths
-
+  #- CDS_API_KEY: $HOME/.cdsapirc
 query: 
   product_type: reanalysis
-  variable: ["2m_dewpoint_temperature", "2m_temperature", "skin_temperature"]
+  # check precipitation
+  variable: ["2m_dewpoint_temperature", "2m_temperature", "skin_temperature", "total_precipitation"]
   year: [2010, 2011]
-  month: [1, 2, 3]
-  day: [1, 2, 3, 4, 5]
-  time: [0, 6, 12, 18]
+  month: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12]
+  day: [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31]
+  time: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23]
+  
+  # in the current workflow we can test with a small number of healthsheds
+  # this bounding box will need to be expanded by ~ 50km (in G's dataset it is 50) or even up to 70 or 08
+  # we can also experiment with a buffer that follows the coastline precisely by 100KM
+
   area: [0, 360, -90, 90]
   data_format: netcdf
   download_format: unarchived

era5_sandbox.egg-info/PKG-INFO

@@ -20,6 +20,8 @@ Classifier: License :: OSI Approved :: Apache Software License
 Requires-Python: >=3.7
 Description-Content-Type: text/markdown
 License-File: LICENSE
+Requires-Dist: fastcore
+Requires-Dist: pyprojroot
 Provides-Extra: dev
 Dynamic: author
 Dynamic: author-email
@@ -30,6 +32,7 @@ Dynamic: home-page
 Dynamic: keywords
 Dynamic: license
 Dynamic: provides-extra
+Dynamic: requires-dist
 Dynamic: requires-python
 Dynamic: summary
 

era5_sandbox.egg-info/SOURCES.txt

@@ -7,6 +7,7 @@ setup.py
 era5_sandbox/__init__.py
 era5_sandbox/_modidx.py
 era5_sandbox/core.py
+era5_sandbox/download.py
 era5_sandbox.egg-info/PKG-INFO
 era5_sandbox.egg-info/SOURCES.txt
 era5_sandbox.egg-info/dependency_links.txt

era5_sandbox.egg-info/requires.txt

@@ -1,2 +1,4 @@
+fastcore
+pyprojroot
 
 [dev]

era5_sandbox/__pycache__/__init__.cpython-313.pyc

@@ -9,8 +9,7 @@
 import os
 import hydra
 import cdsapi
-from fastcore.script import call_parse # for the console script
-
+from core import _expand_path
 from omegaconf import DictConfig, OmegaConf
 
 # %% ../notes/01_download_raw_data.ipynb 5
@@ -39,7 +38,7 @@ def fetch_MDG_GADM(
     https://geodata.ucdavis.edu/gadm/gadm4.1/gpkg/gadm41_MDG.gpkg
     '''
 
-    output_file_path = os.path.join(os.getcwd(), output_file)
+    output_file_path = _expand_path(output_file)
     if os.path.exists(output_file_path):
         print("GADM data already exists")
         return output_file_path
@@ -67,7 +66,7 @@ def download(
 
     # Send the query to the client
     if not testing:
-        client.retrieve(dataset, query).download(os.path.join(output_dir, "{}_{}.nc".format(query.year, query.month)))
+        client.retrieve(dataset, query).download(os.path.join(_expand_path(output_dir), "{}_{}.nc".format(query.year, query.month)))
     else:
         print(f"Testing mode. Not downloading data. Query is {query}")
 

era5_sandbox/__pycache__/core.cpython-313.pyc

@@ -31,7 +31,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 2,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -46,7 +46,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 3,
+   "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
@@ -152,7 +152,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 33,
+   "execution_count": null,
    "metadata": {},
    "outputs": [
     {
@@ -239,21 +239,9 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "era5_sandbox",
+   "display_name": "python3",
    "language": "python",
    "name": "python3"
-  },
-  "language_info": {
-   "codemirror_mode": {
-    "name": "ipython",
-    "version": 3
-   },
-   "file_extension": ".py",
-   "mimetype": "text/x-python",
-   "name": "python",
-   "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.13.2"
   }
  },
  "nbformat": 4,