From 0b5b6e836dcb6632ae36991eaba3ce8af522fadc Mon Sep 17 00:00:00 2001 From: EnfxcFCb6 Date: Tue, 27 May 2025 16:16:48 -0400 Subject: [PATCH 1/2] Standardized README to Markdown format --- README | 32 -------------------------------- README.md | 24 ++++++++++++++++++++++++ 2 files changed, 24 insertions(+), 32 deletions(-) delete mode 100644 README create mode 100644 README.md diff --git a/README b/README deleted file mode 100644 index f4bee44..0000000 --- a/README +++ /dev/null @@ -1,32 +0,0 @@ -Lytton WW; Lipton P. Can the hippocampus tell time?: The -temporo-septal engram shift model. -Neuroreport, 10:2301--2306, 1999. - -This example produces Fig. 1 p 2302 as shown in fig1.gif. The -simulation takes several minutes and the progress is indicated in the -console window by printing the time approximately every 300 ms. At 5000 -ms, the figure will be displayed in two graph windows. The raster plot -will probably be hidden underneath the plot of Net[20].soma.v(0.5) -NB: the first cycle of stimulation produces an initialization artifact -(bursting in all cells) that is not shown in the original figure. - -For questions about the model contact Bill Lytton at -billl@neurosim.downstate.edu - -Michael Hines made some non-substantive changes to vecst.mod (derived -from vecst.mod.orig) to allow running the model under mswin and on the -mac. The most significant being the incorporation of a free version of -srand/drand from -http://www.mit.edu/afs/athena/activity/c/cgs/src/math/drand48/ -or https://www.mit.edu/search/?q=srand%2Fdrand#gsc.tab=0&gsc.q=srand%2Fdrand&gsc.page=1 - Under mswin, this model can only be run using NEURON version 5.2 -2002/02/28 or later since it makes use of calls to sprintf and -hoc_obj_file_arg which were not exported by earlier versions. On a MAC -you may need to increase the memory size for NEURON to 24MB. - -Changelog ---------- -2022-05: Updated MOD files to contain valid C++ and be compatible with - the upcoming versions 8.2 and 9.0 of NEURON. -2022-12: passiv.mod: drop INDEPENDENT block for v - Required for upcoming NEURON 9.0.0 diff --git a/README.md b/README.md new file mode 100644 index 0000000..758833f --- /dev/null +++ b/README.md @@ -0,0 +1,24 @@ +# Lytton WW; Lipton P. Can the hippocampus tell time?: The temporo-septal engram shift model. + +*Neuroreport*, 10:2301–2306, 1999. + +This example produces Fig. 1 p 2302 as shown in fig1.gif. The simulation takes several minutes and the progress is indicated in the console window by printing the time approximately every 300 ms. At 5000 ms, the figure will be displayed in two graph windows. The raster plot will probably be hidden underneath the plot of Net[20].soma.v(0.5). + +**NB:** the first cycle of stimulation produces an initialization artifact (bursting in all cells) that is not shown in the original figure. + +For questions about the model contact Bill Lytton at billl@neurosim.downstate.edu + +Michael Hines made some non-substantive changes to vecst.mod (derived from vecst.mod.orig) to allow running the model under mswin and on the Mac. The most significant being the incorporation of a free version of srand/drand from [http://www.mit.edu/afs/athena/activity/c/cgs/src/math/drand48/](http://www.mit.edu/afs/athena/activity/c/cgs/src/math/drand48/) + +Under mswin, this model can only be run using NEURON version 5.2 2002/02/28 or later since it makes use of calls to sprintf and hoc_obj_file_arg which were not exported by earlier versions. On a MAC you may need to increase the memory size for NEURON to 24MB. + +Changelog +--------- + +- 2022-05: Updated MOD files to contain valid C++ and be compatible with the upcoming versions 8.2 and 9.0 of NEURON. +- 2022-12: passiv.mod: drop INDEPENDENT block for v + Required for upcoming NEURON 9.0.0 + +--- + +2025-05-27 – Standardized to Markdown. \ No newline at end of file From 315a510ca2383a3ff81c5b83d50f56f72fc02b8b Mon Sep 17 00:00:00 2001 From: rsakai Date: Fri, 30 May 2025 14:26:08 -0400 Subject: [PATCH 2/2] Update README.md --- README.md | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/README.md b/README.md index 758833f..78f0338 100644 --- a/README.md +++ b/README.md @@ -18,7 +18,4 @@ Changelog - 2022-05: Updated MOD files to contain valid C++ and be compatible with the upcoming versions 8.2 and 9.0 of NEURON. - 2022-12: passiv.mod: drop INDEPENDENT block for v Required for upcoming NEURON 9.0.0 - ---- - -2025-05-27 – Standardized to Markdown. \ No newline at end of file +- 2025-05-27: Standardized to Markdown.