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This repository was archived by the owner on May 29, 2025. It is now read-only.

Commit 70726f6

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author
John Major
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0.0.3
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pyproject.toml

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[tool.poetry]
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name = "snakemake-executor-plugin-pcluster-slurm"
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version = "0.0.1"
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description = "A Snakemake executor plugin for submitting jobs to an AWS Parallel Cluster SLURM cluster."
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version = "0.0.3"
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description = "A Snakemake executor plugin for submitting jobs to an AWS Parallel Cluster (pcluster) SLURM cluster."
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authors = [
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"John Major <john@daylilyinformatics.com>",
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"Cal <cal@daylilyinformatics.com>"

snakemake_executor_plugin_pcluster_slurm/__init__.py

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@@ -155,8 +155,7 @@ def run_job(self, job: JobExecutorInterface):
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f"sbatch "
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f"--parsable "
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f"--comment '{comment_str}' "
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f"--time={resources.time} "
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f"--job-name '{job.name}-{run_uuid}' "
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f"--job-name '{job.name}-{self.run_uuid}' "
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f"--distribution block "
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f"--chdir {os.getcwd()} "
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f"--error '{slurm_errorlogfile}' "

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