Merge pull request #4060 from CliMA/js/td015

use TDv0.15, tag patch

Author: szy21

.buildkite/Manifest-v1.11.toml

@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.5"
+julia_version = "1.11.6"
 manifest_format = "2.0"
-project_hash = "a0acaae5da2df8c0af06d0681eb7de5079d8cbce"
+project_hash = "12784bf0b21aee2b4075f2bb64383303b89e8560"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7"
@@ -95,15 +95,15 @@ version = "1.1.2"
 
 [[deps.ArrayInterface]]
 deps = ["Adapt", "LinearAlgebra"]
-git-tree-sha1 = "dbd8c3bbbdbb5c2778f85f4422c39960eac65a42"
+git-tree-sha1 = "d2cd034553ee6ca084edaaf8ed6c9d50fd01555d"
 uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
-version = "7.20.0"
+version = "7.21.0"
 
     [deps.ArrayInterface.extensions]
     ArrayInterfaceBandedMatricesExt = "BandedMatrices"
     ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices"
     ArrayInterfaceCUDAExt = "CUDA"
-    ArrayInterfaceCUDSSExt = "CUDSS"
+    ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"]
     ArrayInterfaceChainRulesCoreExt = "ChainRulesCore"
     ArrayInterfaceChainRulesExt = "ChainRules"
     ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore"
@@ -220,9 +220,9 @@ version = "1.3.2"
 
 [[deps.BenchmarkTools]]
 deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"]
-git-tree-sha1 = "e38fbc49a620f5d0b660d7f543db1009fe0f8336"
+git-tree-sha1 = "b6d3a24de30951b196b84a83b5680f15fdc7d621"
 uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
-version = "1.6.0"
+version = "1.6.1"
 
 [[deps.BitTwiddlingConvenienceFunctions]]
 deps = ["Static"]
@@ -306,15 +306,15 @@ version = "5.8.5"
 
 [[deps.CUDA_Compiler_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "8c4f340dd6501a93c4b99b690797772e4a203099"
+git-tree-sha1 = "68bac021c5d511fe39c2f4306cc9623a6626dbb4"
 uuid = "d1e2174e-dfdc-576e-b43e-73b79eb1aca8"
-version = "0.2.1+0"
+version = "0.2.2+0"
 
 [[deps.CUDA_Driver_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "e6a1d9f5518122c186fd27786b61d2053cfa1b0c"
+git-tree-sha1 = "2023be0b10c56d259ea84a94dbfc021aa452f2c6"
 uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc"
-version = "13.0.1+0"
+version = "13.0.2+0"
 
 [[deps.CUDA_Runtime_Discovery]]
 deps = ["Libdl"]
@@ -324,9 +324,9 @@ version = "1.0.0"
 
 [[deps.CUDA_Runtime_jll]]
 deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"]
-git-tree-sha1 = "e24c6de116c0735c37e83b8bc05ed60d4d359693"
+git-tree-sha1 = "92cd84e2b760e471d647153ea5efc5789fc5e8b2"
 uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2"
-version = "0.19.1+0"
+version = "0.19.2+0"
 
 [[deps.Cairo]]
 deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"]
@@ -391,7 +391,7 @@ version = "0.5.20"
 deps = ["Adapt", "ArgParse", "Artifacts", "AtmosphericProfilesLibrary", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaInterpolations", "ClimaParams", "ClimaTimeSteppers", "ClimaUtilities", "CloudMicrophysics", "Dates", "ForwardDiff", "Insolation", "Interpolations", "LazyArtifacts", "LazyBroadcast", "LinearAlgebra", "Logging", "NCDatasets", "NVTX", "NullBroadcasts", "RRTMGP", "Random", "SciMLBase", "SparseMatrixColorings", "StaticArrays", "Statistics", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities", "YAML"]
 path = ".."
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
-version = "0.31.5"
+version = "0.31.6"
 
 [[deps.ClimaComms]]
 deps = ["Adapt", "Logging", "LoggingExtras"]
@@ -487,9 +487,9 @@ version = "0.1.13"
 
 [[deps.CloudMicrophysics]]
 deps = ["ClimaParams", "DocStringExtensions", "ForwardDiff", "LazyArtifacts", "LogExpFunctions", "RootSolvers", "SpecialFunctions", "StaticArrays", "Thermodynamics", "UnrolledUtilities"]
-git-tree-sha1 = "1f5b9fabe548def6571d3ffb2615cf3f4f34fee8"
+git-tree-sha1 = "eb2faa4027a1d2583f42b2a5d7b6a4b3363317d1"
 uuid = "6a9e3e04-43cd-43ba-94b9-e8782df3c71b"
-version = "0.27.4"
+version = "0.28.1"
 
     [deps.CloudMicrophysics.extensions]
     EmulatorModelsExt = ["DataFrames", "MLJ"]
@@ -506,9 +506,9 @@ version = "1.3.9"
 
 [[deps.ColorBrewer]]
 deps = ["Colors", "JSON"]
-git-tree-sha1 = "e771a63cc8b539eca78c85b0cabd9233d6c8f06f"
+git-tree-sha1 = "07da79661b919001e6863b81fc572497daa58349"
 uuid = "a2cac450-b92f-5266-8821-25eda20663c8"
-version = "0.4.1"
+version = "0.4.2"
 
 [[deps.ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
@@ -940,9 +940,9 @@ version = "1.3.7"
 
 [[deps.ForwardDiff]]
 deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"]
-git-tree-sha1 = "dc41303865a16274ecb8450c220021ce1e0cf05f"
+git-tree-sha1 = "ba6ce081425d0afb2bedd00d9884464f764a9225"
 uuid = "f6369f11-7733-5829-9624-2563aa707210"
-version = "1.2.1"
+version = "1.2.2"
 weakdeps = ["StaticArrays"]
 
     [deps.ForwardDiff.extensions]
@@ -1265,9 +1265,9 @@ uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f"
 version = "1.3.1"
 
 [[deps.IrrationalConstants]]
-git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c"
+git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758"
 uuid = "92d709cd-6900-40b7-9082-c6be49f344b6"
-version = "0.2.4"
+version = "0.2.6"
 
 [[deps.Isoband]]
 deps = ["isoband_jll"]
@@ -2139,9 +2139,9 @@ version = "1.3.4"
 
 [[deps.RecursiveArrayTools]]
 deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"]
-git-tree-sha1 = "96bef5b9ac123fff1b379acf0303cf914aaabdfd"
+git-tree-sha1 = "51bdb23afaaa551f923a0e990f7c44a4451a26f1"
 uuid = "731186ca-8d62-57ce-b412-fbd966d074cd"
-version = "3.37.1"
+version = "3.39.0"
 
     [deps.RecursiveArrayTools.extensions]
     RecursiveArrayToolsFastBroadcastExt = "FastBroadcast"
@@ -2396,9 +2396,9 @@ version = "1.11.0"
 
 [[deps.SparseMatrixColorings]]
 deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"]
-git-tree-sha1 = "9de43e0b9b976f1019bf7a879a686c4514520078"
+git-tree-sha1 = "d3f3b7bb8a561b5ff20ee7cf9574841ee4e4e137"
 uuid = "0a514795-09f3-496d-8182-132a7b665d35"
-version = "0.4.21"
+version = "0.4.22"
 
     [deps.SparseMatrixColorings.extensions]
     SparseMatrixColoringsCUDAExt = "CUDA"
@@ -2545,9 +2545,9 @@ version = "7.7.0+0"
 
 [[deps.SurfaceFluxes]]
 deps = ["DocStringExtensions", "RootSolvers", "Thermodynamics"]
-git-tree-sha1 = "a03a545014be4f89d36d4a7d024b69427a105e9e"
+git-tree-sha1 = "4a28939fa34ce9b45f693f33bbe956d1b2903ba2"
 uuid = "49b00bb7-8bd4-4f2b-b78c-51cd0450215f"
-version = "0.12.3"
+version = "0.13.1"
 weakdeps = ["ClimaParams"]
 
     [deps.SurfaceFluxes.extensions]
@@ -2586,10 +2586,17 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
 version = "1.10.0"
 
 [[deps.TaylorSeries]]
-deps = ["LinearAlgebra", "Markdown", "Requires", "SparseArrays"]
-git-tree-sha1 = "31834a05c8a9d52d7f56b23ae7ad1c3b72a4f1bf"
+deps = ["LinearAlgebra", "Markdown", "SparseArrays"]
+git-tree-sha1 = "dbb2073ed3d0b356405abb7562bfb3326f9cb5fe"
 uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea"
-version = "0.13.2"
+version = "0.20.9"
+weakdeps = ["IntervalArithmetic", "JLD2", "RecursiveArrayTools", "StaticArrays"]
+
+    [deps.TaylorSeries.extensions]
+    TaylorSeriesIAExt = "IntervalArithmetic"
+    TaylorSeriesJLD2Ext = "JLD2"
+    TaylorSeriesRATExt = "RecursiveArrayTools"
+    TaylorSeriesSAExt = "StaticArrays"
 
 [[deps.TempestRemap_jll]]
 deps = ["Artifacts", "HDF5_jll", "JLLWrappers", "Libdl", "NetCDF_jll", "OpenBLAS32_jll"]
@@ -2615,9 +2622,9 @@ version = "1.0.2"
 
 [[deps.Thermodynamics]]
 deps = ["DocStringExtensions", "ForwardDiff", "KernelAbstractions", "Random", "RootSolvers"]
-git-tree-sha1 = "e3a9fe706f095c6a176a76ea4613c57900898999"
+git-tree-sha1 = "bae39665e42c36e2e6bf5b814631915ec7d90232"
 uuid = "b60c26fb-14c3-4610-9d3e-2d17fe7ff00c"
-version = "0.14.2"
+version = "0.15.0"
 weakdeps = ["ClimaParams"]
 
     [deps.Thermodynamics.extensions]
@@ -2904,10 +2911,10 @@ uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
 version = "1.59.0+0"
 
 [[deps.oneTBB_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3"
+deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"]
+git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f"
 uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e"
-version = "2022.0.0+0"
+version = "2022.0.0+1"
 
 [[deps.p7zip_jll]]
 deps = ["Artifacts", "Libdl"]

.buildkite/pipeline.yml

@@ -195,7 +195,7 @@ steps:
           --config_file $CONFIG_PATH/plane_density_current_test.yml
           --job_id plane_density_current_test
         artifact_paths: "plane_density_current_test/output_active/*"
-      
+
       - label: ":computer: Density current experiment (AMD)"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl
@@ -313,7 +313,7 @@ steps:
         artifact_paths: "baroclinic_wave_equil_conservation_source/output_active/*"
         agents:
           slurm_mem: 16GB
-      
+
       - label: ":computer: baroclinic wave nonequil moist check conservation with sources"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl --config_file $CONFIG_PATH/baroclinic_wave_nonequil_conservation_source.yml
@@ -356,7 +356,7 @@ steps:
         artifact_paths: "baroclinic_wave_equil/output_active/*"
         agents:
           slurm_constraint: icelake|cascadelake|skylake|epyc
-      
+
       - label: ":computer: no lim baroclinic wave equilmoist (AMD)"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl
@@ -873,7 +873,7 @@ steps:
         artifact_paths: "prognostic_edmfx_rico_column/output_active/*"
         agents:
           slurm_mem: 20GB
-      
+
       - label: ":umbrella: Prognostic EDMFX Rico in a column (implicit)"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl
@@ -939,6 +939,7 @@ steps:
         artifact_paths: "prognostic_edmfx_diurnal_scm_imp/output_active/*"
         agents:
           slurm_mem: 12GB
+        soft_fail: true
 
       - label: ":genie: Prognostic EDMFX Bomex in a box"
         command: >
@@ -1009,7 +1010,7 @@ steps:
         artifact_paths: "prognostic_edmfx_bomex_column_sparse_autodiff/output_active/*"
         agents:
           slurm_mem: 20GB
-      
+
       - label: "Prognostic EDMFX Dycoms RF02 in a column sparse autodiff"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl
@@ -1019,7 +1020,7 @@ steps:
         agents:
           slurm_mem: 20GB
         soft_fail: true
-      
+
       - label: "Prognostic EDMFX TRMM in a column sparse autodiff"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl
@@ -1049,7 +1050,7 @@ steps:
         artifact_paths: "prognostic_edmfx_aquaplanet_sparse_autodiff/output_active/*"
         agents:
           slurm_mem: 20GB
-      
+
       - label: "AMIP Target EDOnly nonequil sparse autodiff"
         command: >
           julia --color=yes --project=.buildkite .buildkite/ci_driver.jl

Project.toml

@@ -1,7 +1,7 @@
 name = "ClimaAtmos"
 uuid = "b2c96348-7fb7-4fe0-8da9-78d88439e717"
 authors = ["Climate Modeling Alliance"]
-version = "0.31.5"
+version = "0.31.6"
 
 [deps]
 Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
@@ -50,7 +50,7 @@ ClimaInterpolations = "0.1.0"
 ClimaParams = "1.0"
 ClimaTimeSteppers = "0.8.2"
 ClimaUtilities = "0.1.23"
-CloudMicrophysics = "0.27.4"
+CloudMicrophysics = "0.28"
 Dates = "1"
 ForwardDiff = "1"
 Insolation = "0.10.2"
@@ -68,8 +68,8 @@ SciMLBase = "~2.108, ~2.109, ~2.110, ~2.111, ~2.112"
 SparseMatrixColorings = "0.4.20"
 StaticArrays = "1.9"
 Statistics = "1"
-SurfaceFluxes = "0.12.3"
-Thermodynamics = "0.14.1"
+SurfaceFluxes = "0.12.3, 0.13"
+Thermodynamics = "0.14.1, 0.15"
 UnrolledUtilities = "0.1.9"
 YAML = "0.4"
 julia = "1.9"

reproducibility_tests/ref_counter.jl

@@ -1,4 +1,4 @@
-267
+268
 
 # **README**
 #
@@ -20,12 +20,15 @@
 
 
 #=
+268
+- Updated deps, specifically SurfaceFluxes.jl
+
 267
 - Changed the pressure-gradient formulation to use the Exner function
   and virtual potential temperature.
 
 266
-- No behavior change, but some new diagnostics are added, and the reference 
+- No behavior change, but some new diagnostics are added, and the reference
   simulations don't have those diagnostics for plotting
 
 265